HL_6SV4_298

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6SV4|1|ZQ|G|1507, 6SV4|1|ZQ|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_298 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.1436

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6SV4|1|ZQ|A|1506
6SV4|1|ZQ|G|1507
6SV4|1|ZQ|C|1508
6SV4|1|ZQ|A|1509
6SV4|1|ZQ|G|1510
6SV4|1|ZQ|U|1511
6SV4|1|ZQ|U|1512

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZF

60S ribosomal protein L19-A

Chain zL

60S ribosomal protein L39

Chain zX

60S ribosomal protein L17-A