HL_6SV4_305

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6SV4|1|ZQ|C|1761

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_305 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.5137

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68791.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6SV4|1|ZQ|C|1759
6SV4|1|ZQ|A|1760
6SV4|1|ZQ|C|1761
6SV4|1|ZQ|C|1762
6SV4|1|ZQ|U|1763
6SV4|1|ZQ|U|1764
6SV4|1|ZQ|U|1765
6SV4|1|ZQ|G|1766

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZF

60S ribosomal protein L19-A

Chain ZL

60S ribosomal protein L22-A