HL_6SV4_313

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

6SV4|1|ZQ|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_313 not in the Motif Atlas

Homologous match to HL_5TBW_047

Geometric discrepancy: 0.1216

The information below is about HL_5TBW_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SV4|1|ZQ|A|2164
6SV4|1|ZQ|G|2165
6SV4|1|ZQ|A|2166
6SV4|1|ZQ|A|2167
6SV4|1|ZQ|A|2168
6SV4|1|ZQ|G|2169
6SV4|1|ZQ|U|2170

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain zA

60S ribosomal protein L8-A

Chain zQ

60S ribosomal protein L15-A

Chain zW

60S ribosomal protein L2-A