HL_6SV4_315

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6SV4|1|ZQ|A|2256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_315 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.319

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6SV4|1|ZQ|G|2253
6SV4|1|ZQ|U|2254
6SV4|1|ZQ|A|2255
6SV4|1|ZQ|A|2256
6SV4|1|ZQ|C|2257
6SV4|1|ZQ|U|2258
6SV4|1|ZQ|A|2259
6SV4|1|ZQ|U|2260
6SV4|1|ZQ|G|2261
6SV4|1|ZQ|A|2262
6SV4|1|ZQ|C|2263

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain 2c

Small subunit ribosomal RNA; SSU rRNA

Chain gc

40S ribosomal protein S30-A

Chain nc

Transfer RNA; tRNA