HL_6SV4_329

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6SV4|1|ZQ|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_329 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1836

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6SV4|1|ZQ|A|2897
6SV4|1|ZQ|G|2898
6SV4|1|ZQ|C|2899
6SV4|1|ZQ|A|2900
6SV4|1|ZQ|G|2901
6SV4|1|ZQ|A|2902
6SV4|1|ZQ|A|2903
6SV4|1|ZQ|U|2904

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain zD

60S ribosomal protein L9-A

Chain zO

Ubiquitin-60S ribosomal protein L40