HL_6SV4_336

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

6SV4|1|ZQ|A|3243, 6SV4|1|ZQ|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_336 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.2013

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6SV4|1|ZQ|C|3240
6SV4|1|ZQ|G|3241
6SV4|1|ZQ|G|3242
6SV4|1|ZQ|A|3243
6SV4|1|ZQ|A|3244
6SV4|1|ZQ|A|3245
6SV4|1|ZQ|G|3246
6SV4|1|ZQ|G|3247

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZA

60S ribosomal protein L3

Chain zU

60S ribosomal protein L16-A