HL_6SV4_342
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6SV4|1|ZS|U|81, 6SV4|1|ZS|C|84, 6SV4|1|ZS|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_342 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.4041
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6SV4|1|ZS|U|69
6SV4|1|ZS|G|70
6SV4|1|ZS|A|71
6SV4|1|ZS|A|72
6SV4|1|ZS|U|73
6SV4|1|ZS|U|74
6SV4|1|ZS|G|75
6SV4|1|ZS|C|76
6SV4|1|ZS|A|77
6SV4|1|ZS|G|78
6SV4|1|ZS|A|79
6SV4|1|ZS|A|80
6SV4|1|ZS|U|81
6SV4|1|ZS|U|82
6SV4|1|ZS|C|83
6SV4|1|ZS|C|84
6SV4|1|ZS|G|85
6SV4|1|ZS|U|86
6SV4|1|ZS|G|87
6SV4|1|ZS|A|88
6SV4|1|ZS|A|89
Current chains
- Chain ZS
- 5.8S rRNA
Nearby chains
- Chain ZP
- 60S ribosomal protein L35-A
- Chain ZQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain zK
- 60S ribosomal protein L26-A
- Chain zL
- 60S ribosomal protein L39
Coloring options: