HL_6SV4_351

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAUGGUCACG

Length

12 nucleotides

Bulged bases

6SV4|1|n|U|16, 6SV4|1|n|G|17, 6SV4|1|n|G|18, 6SV4|1|n|U|19, 6SV4|1|n|C|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_351 not in the Motif Atlas

Geometric match to HL_4JXZ_001

Geometric discrepancy: 0.293

The information below is about HL_4JXZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55043.1

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

4

Unit IDs

6SV4|1|n|C|12
6SV4|1|n|C|13
6SV4|1|n|A|14
6SV4|1|n|A|15
6SV4|1|n|U|16
6SV4|1|n|G|17
6SV4|1|n|G|18
6SV4|1|n|U|19
6SV4|1|n|C|20
6SV4|1|n|A|21
6SV4|1|n|C|22
6SV4|1|n|G|23

Current chains

Chain n

tRNA (P/P)

Nearby chains

Chain AG

60S ribosomal protein L11-A

Chain AP

60S ribosomal protein L42-A

Chain BQ

Large subunit ribosomal RNA; LSU rRNA