HL_6SV4_355

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUAGGAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_355 not in the Motif Atlas

Homologous match to HL_6ORD_036

Geometric discrepancy: 0.2542

The information below is about HL_6ORD_036

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

47

Unit IDs

6SV4|1|nb|A|31
6SV4|1|nb|U|32
6SV4|1|nb|U|33
6SV4|1|nb|A|34
6SV4|1|nb|G|35
6SV4|1|nb|G|36
6SV4|1|nb|A|37
6SV4|1|nb|A|38
6SV4|1|nb|U|39

Current chains

Chain nb

tRNA (A/P)

Nearby chains

Chain 2b

Small subunit ribosomal RNA; SSU rRNA

Chain YQ

Large subunit ribosomal RNA; LSU rRNA

Chain cb

40S ribosomal protein S23-A