HL_6SV4_359

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_359 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.3867

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6SV4|1|nc|G|53
6SV4|1|nc|U|54
6SV4|1|nc|U|55
6SV4|1|nc|C|56
6SV4|1|nc|G|57
6SV4|1|nc|A|58
6SV4|1|nc|U|59
6SV4|1|nc|U|60
6SV4|1|nc|C|61

Current chains

Chain nc

tRNA (A/P)

Nearby chains

Chain ZD

60S ribosomal protein L10

Chain ZQ

Large subunit ribosomal RNA; LSU rRNA

Chain zG

60S ribosomal protein L11-A