HL_6SV4_365

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_365 not in the Motif Atlas

Geometric match to HL_5J7L_212

Geometric discrepancy: 0.2936

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6SV4|1|ZQ|G|1266
6SV4|1|ZQ|U|1267
6SV4|1|ZQ|G|1268
6SV4|1|ZQ|U|1269
6SV4|1|ZQ|A|1270
6SV4|1|ZQ|A|1271
6SV4|1|ZQ|C|1272
6SV4|1|ZQ|A|1273
6SV4|1|ZQ|A|1274
6SV4|1|ZQ|C|1275

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZU

60S acidic ribosomal protein P0