HL_6SWA_027

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

6SWA|1|q|G|1803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_027 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.4545

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6SWA|1|q|C|1798
6SWA|1|q|U|1799
6SWA|1|q|G|1800
6SWA|1|q|G|1801
6SWA|1|q|C|1802
6SWA|1|q|G|1803
6SWA|1|q|U|1804
6SWA|1|q|G|1805

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain D

60S ribosomal protein L5

Chain R

60S ribosomal protein L21

Chain Z

60S ribosomal protein L29