HL_6SWA_031

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_031 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.1567

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6SWA|1|q|U|1987
6SWA|1|q|G|1988
6SWA|1|q|U|1989
6SWA|1|q|A|1990
6SWA|1|q|A|1991
6SWA|1|q|C|1992
6SWA|1|q|A|1993
6SWA|1|q|A|1994

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain k

Ubiquitin-60S ribosomal protein L40