HL_6SWA_045

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

6SWA|1|q|C|2773, 6SWA|1|q|G|2775, 6SWA|1|q|A|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_045 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.1181

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6SWA|1|q|C|2771
6SWA|1|q|G|2772
6SWA|1|q|C|2773
6SWA|1|q|A|2774
6SWA|1|q|G|2775
6SWA|1|q|C|2776
6SWA|1|q|A|2777
6SWA|1|q|G|2778

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain C

60S ribosomal protein L4

Chain O

60S ribosomal protein L17

Chain h

60S ribosomal protein L37

Chain j

60S ribosomal protein L39