HL_6SWA_052

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6SWA|1|q|A|3731

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_052 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.369

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6SWA|1|q|G|3728
6SWA|1|q|U|3729
6SWA|1|q|A|3730
6SWA|1|q|A|3731
6SWA|1|q|C|3732
6SWA|1|q|U|3733
6SWA|1|q|A|3734
6SWA|1|q|U|3735
6SWA|1|q|G|3736
6SWA|1|q|A|3737
6SWA|1|q|C|3738

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains