HL_6SWA_053

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6SWA|1|q|U|3773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_053 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1499

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6SWA|1|q|U|3767
6SWA|1|q|C|3768
6SWA|1|q|U|3769
6SWA|1|q|A|3770
6SWA|1|q|A|3771
6SWA|1|q|U|3772
6SWA|1|q|U|3773
6SWA|1|q|A|3774
6SWA|1|q|G|3775

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain T

60S ribosomal protein L23