3D structure

PDB id
6SWC (explore in PDB, NAKB, or RNA 3D Hub)
Description
IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
G(OMC)UCAUAAC
Length
9 nucleotides
Bulged bases
6SWC|1|4|U|33
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SWC_033 not in the Motif Atlas
Homologous match to HL_6CFJ_107
Geometric discrepancy: 0.1432
The information below is about HL_6CFJ_107
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
54

Unit IDs

6SWC|1|4|G|31
6SWC|1|4|OMC|32
6SWC|1|4|U|33
6SWC|1|4|C|34
6SWC|1|4|A|35
6SWC|1|4|U|36
6SWC|1|4|A|37
6SWC|1|4|A|38
6SWC|1|4|C|39

Current chains

Chain 4
initiator Met-tRNA fMet from E. coli (A1U72 variant)

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain 5
mRNA
Chain K
30S ribosomal protein S9
Chain O
30S ribosomal protein S13
Chain T
30S ribosomal protein S19

Coloring options:


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