HL_6SXO_004

3D structure

PDB id

6SXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

6SXO|1|L5|U|2708, 6SXO|1|L5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SXO_004 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.158

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6SXO|1|L5|C|2704
6SXO|1|L5|G|2705
6SXO|1|L5|G|2706
6SXO|1|L5|U|2707
6SXO|1|L5|U|2708
6SXO|1|L5|C|2709
6SXO|1|L5|C|2710
6SXO|1|L5|G|2711
6SXO|1|L5|G|2712

Current chains

Chain L5

28S ribosomal RNA including ES27L-B (2839-3265)

Nearby chains

Chain A

Proliferation-associated protein 2G4

Chain LR

60S ribosomal protein L19