HL_6SXO_005
3D structure
- PDB id
- 6SXO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human Ebp1-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SXO_005 not in the Motif Atlas
- Geometric match to HL_7A0S_001
- Geometric discrepancy: 0.1878
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6SXO|1|L8|C|47
6SXO|1|L8|A|48
6SXO|1|L8|G|49
6SXO|1|L8|C|50
6SXO|1|L8|U|51
6SXO|1|L8|A|52
6SXO|1|L8|G|53
6SXO|1|L8|C|54
6SXO|1|L8|U|55
6SXO|1|L8|G|56
Current chains
- Chain L8
- 5.8S ribosomal RNA
Nearby chains
- Chain A
- Proliferation-associated protein 2G4
- Chain LX
- 60S ribosomal protein L23a
- Chain Lh
- 60S ribosomal protein L35
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