3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
AGAGAAU
Length
7 nucleotides
Bulged bases
6SZS|1|A|A|1634
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SZS_041 not in the Motif Atlas
Homologous match to HL_5J7L_174
Geometric discrepancy: 0.0867
The information below is about HL_5J7L_174
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6SZS|1|A|A|1630
6SZS|1|A|G|1631
6SZS|1|A|A|1632
6SZS|1|A|G|1633
6SZS|1|A|A|1634
6SZS|1|A|A|1635
6SZS|1|A|U|1636

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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