HL_6T3S_005

3D structure

PDB id

6T3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

UGCUCAA

Length

7 nucleotides

Bulged bases

6T3S|1|A|G|179, 6T3S|1|A|C|180, 6T3S|1|A|U|182

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T3S_005 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3811

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6T3S|1|A|U|178
6T3S|1|A|G|179
6T3S|1|A|C|180
6T3S|1|A|U|182
6T3S|1|A|C|185
6T3S|1|A|A|186
6T3S|1|A|A|187

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains