HL_6T4Q_032

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6T4Q|1|C1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_032 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.1243

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6T4Q|1|C1|C|1076
6T4Q|1|C1|U|1077
6T4Q|1|C1|U|1078
6T4Q|1|C1|A|1079
6T4Q|1|C1|A|1080
6T4Q|1|C1|U|1081
6T4Q|1|C1|U|1082
6T4Q|1|C1|G|1083

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21-A

Chain Lb

60S ribosomal protein L29