HL_6T4Q_035

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6T4Q|1|C1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_035 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.2466

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6T4Q|1|C1|C|1239
6T4Q|1|C1|A|1240
6T4Q|1|C1|U|1241
6T4Q|1|C1|G|1242
6T4Q|1|C1|G|1243
6T4Q|1|C1|A|1244
6T4Q|1|C1|A|1245
6T4Q|1|C1|G|1246
6T4Q|1|C1|U|1247
6T4Q|1|C1|C|1248
6T4Q|1|C1|G|1249

Current chains

Chain C1

25S rRNA

Nearby chains