HL_6T4Q_058

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6T4Q|1|C1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_058 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0721

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6T4Q|1|C1|U|2292
6T4Q|1|C1|C|2293
6T4Q|1|C1|U|2294
6T4Q|1|C1|A|2295
6T4Q|1|C1|A|2296
6T4Q|1|C1|U|2297
6T4Q|1|C1|U|2298
6T4Q|1|C1|A|2299
6T4Q|1|C1|G|2300

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LV

60S ribosomal protein L23-A