HL_6T4Q_086

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6T4Q|1|C2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_086 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.0773

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6T4Q|1|C2|G|243
6T4Q|1|C2|A|244
6T4Q|1|C2|U|245
6T4Q|1|C2|G|246
6T4Q|1|C2|A|247
6T4Q|1|C2|U|248
6T4Q|1|C2|U|249
6T4Q|1|C2|C|250

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SL

40S ribosomal protein S11-A