HL_6T4Q_088

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

6T4Q|1|C2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_088 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.0847

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6T4Q|1|C2|G|330
6T4Q|1|C2|A|331
6T4Q|1|C2|U|332
6T4Q|1|C2|A|333
6T4Q|1|C2|G|334
6T4Q|1|C2|U|335
6T4Q|1|C2|G|336
6T4Q|1|C2|G|337
6T4Q|1|C2|C|338

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A