HL_6T4Q_100
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6T4Q_100 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.3132
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6T4Q|1|C2|A|829
6T4Q|1|C2|U|830
6T4Q|1|C2|U|831
6T4Q|1|C2|U|832
6T4Q|1|C2|U|833
6T4Q|1|C2|G|834
6T4Q|1|C2|U|835
6T4Q|1|C2|U|836
6T4Q|1|C2|G|837
6T4Q|1|C2|G|838
6T4Q|1|C2|U|839
6T4Q|1|C2|U|840
6T4Q|1|C2|U|841
6T4Q|1|C2|C|842
6T4Q|1|C2|U|843
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6-A
- Chain SL
- 40S ribosomal protein S11-A
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