HL_6T4Q_118
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6T4Q|1|C3|C|84, 6T4Q|1|C3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6T4Q_118 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.2077
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6T4Q|1|C3|U|69
6T4Q|1|C3|G|70
6T4Q|1|C3|A|71
6T4Q|1|C3|A|72
6T4Q|1|C3|U|73
6T4Q|1|C3|U|74
6T4Q|1|C3|G|75
6T4Q|1|C3|C|76
6T4Q|1|C3|A|77
6T4Q|1|C3|G|78
6T4Q|1|C3|A|79
6T4Q|1|C3|A|80
6T4Q|1|C3|U|81
6T4Q|1|C3|U|82
6T4Q|1|C3|C|83
6T4Q|1|C3|C|84
6T4Q|1|C3|G|85
6T4Q|1|C3|U|86
6T4Q|1|C3|G|87
6T4Q|1|C3|A|88
6T4Q|1|C3|A|89
Current chains
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LY
- 60S ribosomal protein L26-A
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Ll
- 60S ribosomal protein L39
Coloring options: