HL_6T59_009

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

6T59|1|54|U|224, 6T59|1|54|G|225

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_009 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1453

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6T59|1|54|C|222
6T59|1|54|G|223
6T59|1|54|U|224
6T59|1|54|G|225
6T59|1|54|G|226

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Y3

Ribosomal protein L26