HL_6T59_011

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

6T59|1|54|A|295, 6T59|1|54|A|296

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_011 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.1279

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6T59|1|54|C|289
6T59|1|54|U|290
6T59|1|54|U|291
6T59|1|54|G|292
6T59|1|54|G|293
6T59|1|54|G|294
6T59|1|54|A|295
6T59|1|54|A|296
6T59|1|54|U|297
6T59|1|54|G|298

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain N3

Ribosomal protein L15

Chain Q3

eL18

Chain a3

uL15

Chain o3

eL42