HL_6T59_020

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6T59|1|54|C|1325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_020 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0846

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6T59|1|54|U|1317
6T59|1|54|C|1318
6T59|1|54|U|1319
6T59|1|54|U|1320
6T59|1|54|G|1321
6T59|1|54|A|1322
6T59|1|54|A|1323
6T59|1|54|A|1324
6T59|1|54|C|1325
6T59|1|54|A|1326

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain a3

uL15

Chain e3

eL32