HL_6T59_044

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6T59|1|54|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_044 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.1949

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6T59|1|54|G|2624
6T59|1|54|U|2625
6T59|1|54|U|2626
6T59|1|54|C|2627
6T59|1|54|U|2628
6T59|1|54|C|2629
6T59|1|54|U|2630
6T59|1|54|U|2631
6T59|1|54|U|2632

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain NI

Nascent polypeptide-associated complex subunit alpha N-terminal region

Chain R3

eL19

Chain U3

eL22