HL_6T59_061

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6T59|1|54|A|4214, 6T59|1|54|C|4221

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_061 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1417

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6T59|1|54|U|4210
6T59|1|54|C|4211
6T59|1|54|A|4212
6T59|1|54|A|4213
6T59|1|54|A|4214
6T59|1|54|C|4215
6T59|1|54|G|4216
6T59|1|54|G|4217
6T59|1|54|U|4218
6T59|1|54|A|4219
6T59|1|54|A|4220
6T59|1|54|C|4221
6T59|1|54|G|4222

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain T3

eL21

Chain b3

eL29