HL_6T59_068

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6T59|1|54|G|4475

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_068 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1041

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6T59|1|54|A|4474
6T59|1|54|G|4475
6T59|1|54|C|4476
6T59|1|54|A|4477
6T59|1|54|G|4478
6T59|1|54|A|4479
6T59|1|54|A|4480
6T59|1|54|U|4481

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain m3

eL40