HL_6T59_072

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_072 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1995

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6T59|1|54|U|4646
6T59|1|54|G|4647
6T59|1|54|A|4648
6T59|1|54|G|4649
6T59|1|54|G|4650
6T59|1|54|A|4651

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain NI

Nascent polypeptide-associated complex subunit alpha N-terminal region

Chain R3

eL19

Chain U3

eL22

Chain d3

eL31