HL_6T7I_027

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6T7I|1|C1|U|879, 6T7I|1|C1|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_027 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.1134

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6T7I|1|C1|A|876
6T7I|1|C1|C|877
6T7I|1|C1|G|878
6T7I|1|C1|U|879
6T7I|1|C1|G|880
6T7I|1|C1|C|881
6T7I|1|C1|A|882
6T7I|1|C1|A|883
6T7I|1|C1|A|884
6T7I|1|C1|U|885

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17-A

Chain Lj

60S ribosomal protein L37-A