HL_6T7I_035

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_035 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.3375

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6T7I|1|C1|U|1267
6T7I|1|C1|G|1268
6T7I|1|C1|U|1269
6T7I|1|C1|A|1270
6T7I|1|C1|A|1271
6T7I|1|C1|C|1272
6T7I|1|C1|A|1273
6T7I|1|C1|A|1274

Current chains

Chain C1

25S ribosomal RNA

Nearby chains