HL_6T7I_053

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

6T7I|1|C1|A|2138, 6T7I|1|C1|A|2139, 6T7I|1|C1|U|2140, 6T7I|1|C1|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_053 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1247

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6T7I|1|C1|U|2135
6T7I|1|C1|C|2136
6T7I|1|C1|U|2137
6T7I|1|C1|A|2138
6T7I|1|C1|A|2139
6T7I|1|C1|U|2140
6T7I|1|C1|U|2141
6T7I|1|C1|A|2142
6T7I|1|C1|A|2143
6T7I|1|C1|A|2144
6T7I|1|C1|A|2145

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain Lj

60S ribosomal protein L37-A