HL_6T7I_107

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6T7I|1|C2|G|1243

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_107 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2256

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6T7I|1|C2|A|1238
6T7I|1|C2|U|1239
6T7I|1|C2|U|1240
6T7I|1|C2|G|1241
6T7I|1|C2|A|1242
6T7I|1|C2|G|1243
6T7I|1|C2|A|1244
6T7I|1|C2|G|1245
6T7I|1|C2|C|1246
6T7I|1|C2|U|1247

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29-A

Chain Sf

Ubiquitin-40S ribosomal protein S31