3D structure

PDB id
6T7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUAAUUG
Length
8 nucleotides
Bulged bases
6T7T|1|C1|U|1081
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6T7T_030 not in the Motif Atlas
Geometric match to HL_5TBW_024
Geometric discrepancy: 0.1318
The information below is about HL_5TBW_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

6T7T|1|C1|C|1076
6T7T|1|C1|U|1077
6T7T|1|C1|U|1078
6T7T|1|C1|A|1079
6T7T|1|C1|A|1080
6T7T|1|C1|U|1081
6T7T|1|C1|U|1082
6T7T|1|C1|G|1083

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LD
60S ribosomal protein L5
Chain LT
60S ribosomal protein L21-A
Chain Lb
60S ribosomal protein L29

Coloring options:


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