HL_6T7T_052

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

6T7T|1|C1|A|2138, 6T7T|1|C1|A|2139, 6T7T|1|C1|U|2140, 6T7T|1|C1|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_052 not in the Motif Atlas

Geometric match to HL_5TBW_046

Geometric discrepancy: 0.1004

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6T7T|1|C1|U|2135
6T7T|1|C1|C|2136
6T7T|1|C1|U|2137
6T7T|1|C1|A|2138
6T7T|1|C1|A|2139
6T7T|1|C1|U|2140
6T7T|1|C1|U|2141
6T7T|1|C1|A|2142
6T7T|1|C1|A|2143
6T7T|1|C1|A|2144
6T7T|1|C1|A|2145

Current chains

Chain C1

25S rRNA

Nearby chains

Chain A

nascent chain

Chain LA

60S ribosomal protein L2-A

Chain Lj

60S ribosomal protein L37-A