HL_6T7T_107

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6T7T|1|C2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_107 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.1311

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6T7T|1|C2|C|1309
6T7T|1|C2|U|1310
6T7T|1|C2|U|1311
6T7T|1|C2|A|1312
6T7T|1|C2|A|1313
6T7T|1|C2|U|1314
6T7T|1|C2|U|1315
6T7T|1|C2|G|1316

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17-B