HL_6T83_046

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

6T83|1|1b|A|2138, 6T83|1|1b|A|2139, 6T83|1|1b|U|2140, 6T83|1|1b|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_046 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.168

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6T83|1|1b|U|2135
6T83|1|1b|C|2136
6T83|1|1b|U|2137
6T83|1|1b|A|2138
6T83|1|1b|A|2139
6T83|1|1b|U|2140
6T83|1|1b|U|2141
6T83|1|1b|A|2142
6T83|1|1b|A|2143
6T83|1|1b|A|2144
6T83|1|1b|A|2145

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Ay

60S ribosomal protein L2-A

Chain jb

60S ribosomal protein L37-A