HL_6T83_080

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

6T83|1|2b|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_080 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.2092

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6T83|1|2b|G|330
6T83|1|2b|A|331
6T83|1|2b|U|332
6T83|1|2b|A|333
6T83|1|2b|G|334
6T83|1|2b|U|335
6T83|1|2b|G|336
6T83|1|2b|G|337
6T83|1|2b|C|338

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Ib

40S ribosomal protein S8-A

Chain Lb

40S ribosomal protein S11-A