HL_6T83_091

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_091 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.3202

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6T83|1|2b|A|829
6T83|1|2b|U|830
6T83|1|2b|U|831
6T83|1|2b|U|832
6T83|1|2b|U|833
6T83|1|2b|G|834
6T83|1|2b|U|835
6T83|1|2b|U|836
6T83|1|2b|G|837
6T83|1|2b|G|838
6T83|1|2b|U|839
6T83|1|2b|U|840
6T83|1|2b|U|841
6T83|1|2b|C|842
6T83|1|2b|U|843

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Gb

40S ribosomal protein S6-A

Chain Lb

40S ribosomal protein S11-A