HL_6T83_135

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGUAAAAC

Length

9 nucleotides

Bulged bases

6T83|1|Aa|U|689, 6T83|1|Aa|A|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_135 not in the Motif Atlas

Homologous match to HL_8C3A_015

Geometric discrepancy: 0.1553

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6T83|1|Aa|G|686
6T83|1|Aa|U|687
6T83|1|Aa|G|688
6T83|1|Aa|U|689
6T83|1|Aa|A|690
6T83|1|Aa|A|691
6T83|1|Aa|A|692
6T83|1|Aa|A|693
6T83|1|Aa|C|694

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Ca

5.8S ribosomal RNA; 5.8S rRNA

Chain Fa

60S ribosomal protein L4-A

Chain J

60S ribosomal protein L26-A

Chain Na

60S ribosomal protein L13-A

Chain Pa

60S ribosomal protein L15-A