HL_6T83_140

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6T83|1|Aa|U|879, 6T83|1|Aa|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_140 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1529

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6T83|1|Aa|A|876
6T83|1|Aa|C|877
6T83|1|Aa|G|878
6T83|1|Aa|U|879
6T83|1|Aa|G|880
6T83|1|Aa|C|881
6T83|1|Aa|A|882
6T83|1|Aa|A|883
6T83|1|Aa|A|884
6T83|1|Aa|U|885

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L17-A

Chain Ea

60S ribosomal protein L3

Chain U

60S ribosomal protein L37-A