HL_6T83_161

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

6T83|1|Aa|C|1846, 6T83|1|Aa|G|1848, 6T83|1|Aa|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_161 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.233

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6T83|1|Aa|C|1844
6T83|1|Aa|G|1845
6T83|1|Aa|C|1846
6T83|1|Aa|A|1847
6T83|1|Aa|G|1848
6T83|1|Aa|C|1849
6T83|1|Aa|A|1850
6T83|1|Aa|G|1851

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L17-A

Chain Fa

60S ribosomal protein L4-A

Chain U

60S ribosomal protein L37-A

Chain W

60S ribosomal protein L39