HL_6T83_169

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6T83|1|Aa|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_169 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1862

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6T83|1|Aa|G|2253
6T83|1|Aa|U|2254
6T83|1|Aa|A|2255
6T83|1|Aa|A|2256
6T83|1|Aa|C|2257
6T83|1|Aa|U|2258
6T83|1|Aa|A|2259
6T83|1|Aa|U|2260
6T83|1|Aa|G|2261
6T83|1|Aa|A|2262
6T83|1|Aa|C|2263

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA