HL_6T83_203

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6T83|1|a|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_203 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1916

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6T83|1|a|G|243
6T83|1|a|A|244
6T83|1|a|U|245
6T83|1|a|G|246
6T83|1|a|A|247
6T83|1|a|U|248
6T83|1|a|U|249
6T83|1|a|C|250

Current chains

Chain a

18S rRNA

Nearby chains

Chain f

40S ribosomal protein S4-A

Chain h

40S ribosomal protein S6-A

Chain m

40S ribosomal protein S11-A